Published Papers
  1. Bozkaya, U., Ünal, A., Alagöz, Y. 2020. “Energy and Analytic Gradients for the Orbital-Optimized Coupled-Cluster Doubles Method with the Density-Fitting Approximation: An Efficient Implementation”, J. Chem. Phys., 153, 244115. DOI: 10.1063/5.0035811

  2. Mammadova, F., Hamarat, B., Ahmadli, D., Şahin, O., Bozkaya, U., Türkmen, Y. E. 2020. "Polarization‐Enhanced Hydrogen Bonding in 1,8‐Dihydroxynaphthalene: Conformational Analysis, Binding Studies and Hydrogen Bonding Catalysis", ChemistrySelect, 5, 13387–13396. DOI: 10.1002/slct.202002960

  3. Servan, S. A., Ünal, A., Hamarat, B., Bozkaya, U. 2020. "Assessment of the Density-Fitted Second-Order Quasidegenerate Perturbation Theory for Transition Energies: Accurate Computations of Singlet-Triplet Gaps for Charge-Transfer Compounds", J. Phys. Chem. A, 124, 6889–6898. DOI: 10.1021/acs.jpca.0c04555

  4. Eşsiz, S., Bozkaya, U. 2020. "Computational Study for the Reaction Mechanism of N-Hydroxyphthalimide-Catalyzed Oxidative Cleavage of Alkenes"J. Org. Chem., 85, 10136–10142. DOI: 10.1021/acs.joc.0c01472

  5. Smith, D. G. A., Burns, L. A., Simmonett, A. C., Parrish, R. M., Schieber, M. C., Galvelis, R., Kraus, P., Kruse H., Remigio, R. D., Alenaizan, A.,  James, A. M., Lehtola, S., Misiewicz, J. P., Scheurer, M., Shaw, R. A., Schriber, J. B., Xie, Y., Glick, Z. L., Sirianni, D. A., O’Brien, J. S., Waldrop, J. M., Kumar, A., Hohenstein, E. G., Pritchard, B. P., Brooks, B. R., Schaefer III, H. F., Sokolov, A. Y., Patkowski, K., DePrince III, A. E., Bozkaya, U., King, R. A, Evangelista, F. A., Turney, J. M., Crawford, T. D., Sherrill, C. D. 2020. "Psi4 1.4: Open-source software for high-throughput quantum chemistry", J. Chem. Phys., 152, 184108. DOI: 10.1063/5.0006002

  6. Warden, C. E., Smith, D. G. A., Burns, L. A., Bozkaya, U., Sherrill, C. D. 2020. "Efficient and automated computation of accurate molecular geometries using focal-point approximations to large-basis coupled-cluster theory". J. Chem. Phys., 152, 124109. DOI: 10.1063/5.0004863

  7. Ünal, A., Bozkaya, U. 2020. " Ionized water clusters (H2O)+n, n= 2 to 6: A high-accuracy study of structures and energetics". Int. J. Quant. Chem., 120, e26100. DOI: 10.1002/qua.26100.

  8. Atakay, M., Aksakal, F., Bozkaya, U., Salih, B., Wesdemiotis, C. 2020. "Conformational Characterization of Polyelectrolyte Oligomers and Their Noncovalent Complexes Using Ion Mobility-Mass Spectrometry", J. Am. Soc. Mass Spectrom., 31, 441−449. DOI: 10.1021/jasms.9b00135

  9. Bozkaya, U., Soydaş, E., Filiz, B. 2020. "State-of-the-Art Computations of Dipole Moments Using Analytic Gradients of High-Level Density-Fitted Coupled-Cluster Methods with Focal-Point Approximations". J. Comput. Chem., 41, 769–779. DOI: 10.1002/jcc.26126 

  10. Bozkaya, U. 2019. "An Efficient Implementation of the Second-Order Quasidegenerate Perturbation Theory with Density-Fitting and Cholesky Decomposition Approximations: Is It Possible to Use HartreeFock Orbitals for a Multiconfigurational Perturbation Theory?". J. Chem. Theory Comput., 15 (8), 4415-4429. DOI: 10.1021/acs.jctc.9b00378

  11. Köse, A., Ünal A., Şahin, E., Bozkaya U., Kara Y. 2019. “An anomalous addition of chlorosulfonyl isocyanate to a carbonyl group: the synthesis of ((3aS,7aR,E)-2-ethyl3-oxo-2,3,3a,4,7,7a-hexahydro-1H-isoindol1-ylidene)sulfamoyl chloride”. Beilstein J. Org. Chem., 15, 931–936. DOI:10.3762/bjoc.15.89

  12. Donmez, S. E., Soydaş, E., Aydın, G., Şahin, O., Bozkaya, U. and Türkmen, Y. E. 2019. “Aza-Nazarov Cyclization Reactions via Anion Exchange Catalysis”. Org. Lett.21 (2), 554-558. DOI: 10.1021/acs.orglett.8b03886

  13. Bozkaya, U., Ünal, A. 2018. "State-of-the-Art Computations of Vertical Ionization Potentials with the Extended Koopmans’ Theorem Integrated with the CCSD(T) Method". J. Phys. Chem. A122, 4375−4380. DOI: 10.1021/acs.jpca.8b01851

  14. Ünal, A., Bozkaya, U. 2018. "Anionic water pentamer and hexamer clusters: An extensive study of structures and energetics". J. Chem. Phys., 148, 124307, DOI: 10.1063/1.5025233

  15. Bozkaya, U. 2018. "Analytic energy gradients for orbital-optimized MP3 and MP2.5 with the density-fitting approximation: An efficient implementation". J. Comput. Chem.39, 351–360. DOI: 10.1002/jcc.25122

  16. Demircan, Ç. A., Bozkaya, U. 2017. "Transition Metal Cation−π Interactions: Complexes Formed by Fe2+ , Co2+, Ni2+, Cu2+, and Zn2+ Binding with Benzene Molecules". J. Phys. Chem. A, 121(34), pp 6500–6509. DOI: 10.1021/acs.jpca.7b05759

  17. Koçak, R., Yıldız, D., Bozkaya, U., Daştan, A., Bozdemir, Ö. A. 2017. "Dihydropyridazine-appended dibenzosuberenones as a new class of fluorophores: Application to fluoride sensing". Tett. lett., Volume 58, Issue 30, 2981-2985. DOI: 10.1016/j.tetlet.2017.06.059

  18. Bozkaya, U., Sherrill, C. D. 2017. "Analytic energy gradients for the coupled-cluster singles and doubles with perturbative triples method with the density-fitting approximation". J. Chem. Phys. 147, 044104. DOI: 10.1063/1.4994918

  19. Parrish, R. M., Burns, L. A., Smith, D. G. A., Simmonett, A. C., De Prince, III, A. E., Hohenstein, E. G., Bozkaya, U., Sokolov, A. Y., Remigio, R. D., Richard, R. M., Gonthier, J. F., James, A. M., McAlexander, H. R., Kumar, A., Saitow, M., Wang, X., Pritchard, B. P., Verma, P., Schaefer, III, H. F., Patkowski, K., King, R. A., Valeev, E. F., Evangelista, F. A., Turney, J. M., Crawford, T. D. and Sherrill, C. D. 2017. "PSI4 1.1: An Open-Source Electronic Structure Program Emphasizing Automation, Advanced Libraries, and Interoperability". J. Chem. Theory Comput.13 (7), 3185–3197. DOI: 10.1021/acs.jctc.7b00174

  20. Bozkaya, U. 2016. “Orbital-Optimized MP3 and MP2.5 with Density-Fitting and Cholesky Decomposition Approximations”. J. Chem. Theory Comput., 12, 1179-1188. DOI: 10.1021/acs.jctc.5b01128

  21. Bozkaya, U. 2016. “Orbital-Optimized Linearized Coupled-Cluster Doubles with Density- Fitting and Cholesky Decomposition Approximations: An Efficient Implementation”. Phys. Chem. Chem. Phys., 18, 11362-11373. DOI: 10.1039/C6CP00164E

  22. Bozkaya, U. 2016. “A Noniterative Asymmetric Triple Excitation Correction for The Density-Fitted Coupled-Cluster Singles and Doubles Method: Preliminary Applications”. J. Chem. Phys., 144, 144108. DOI: 10.1063/1.4945706.

  23. Bozkaya, U., Sherrill, C. D. 2016. “Analytic Energy Gradients for the Coupled-Cluster Singles and Doubles Method with the Density-Fitting Approximation”. J. Chem. Phys., 144, 174103. DOI: 10.1063/1.4948318.

  24. Karaca, E.; Can, K. H.; Bozkaya, U.; Pekmez, N. Ö. 2016. “Charge Transfer Complex of p-aminodiphenyldiamine with Maleic Anhydride: spectroscopic, electrochemical and physical properties”. Chem. Phys. Chem., 17, 2056-2065. DOI: 10.1002/cphc.201600161

  25. Yıldız, D.; Bozkaya, U. 2016. “Assessment of the Extended Koopmans’ Theorem for the Chemical Reactivity: Accurate Computations of Chemical Potentials, Chemical Hardnesses, and Electrophilicity Indices”. J. Comput. Chem., 37, 345-353. DOI: 10.1002/jcc.24225

  26. Üçüncü, M., Cantürk, C., Karakus, E., Zeybek, H., Bozkaya, U., Soydas, E., Sahin, E., Emrullahoğlu, M. 2016. "A Rare γ-Pyranopyrazole Skeleton: Design, One-Pot Synthesis and Computational study”. Org. Biomol. Chem., 14, 7490-7494. DOI: 10.1039/C6OB01099G

  27. Soydaş, E., Bozkaya, U. 2015. “Assessment of Orbital-Optimized MP2.5 for Thermochemistry and Kinetics: Dramatic Failures of Standard Perturbation Theory Approaches for Aromatic Bond Dissociation Energies and Barrier Heights of Radical Reactions”. J. Chem. Theory Comput., 11, 1564−1573. DOI: 10.1021/ct501184w

  28. Bozkaya, U. 2014. “Derivation of General Analytic Gradient Expressions for Density-Fitted Post-Hartree-Fock Methods: An Efficient Implementation for the Density-Fitted Second-Order Møller-Plesset Perturbation Theory”. J. Chem. Phys., 141, 124108. DOI: 10.1063/1.4903269

  29. Bozkaya, U. 2014. “Analytic Energy Gradients and Spin Multiplicities for Orbital-Optimized Second-Order Perturbation Theory with Density-Fitting Approximation: An Efficient Implementation”. J. Chem. Theory Comput., 10, 4389-4399. DOI: 10.1021/ct500634s

  30. Bozkaya, U. 2014. “Orbital-Optimized Second-Order Perturbation Theory with Density-Fitting and Cholesky Decomposition Approximations: An Efficient Implementation”. J. Chem. Theory Comput.,10, 2371-2378DOI: 10.1021/ct500231c

  31. Bozkaya, U. 2014. “Accurate Electron Affinities from the Extended Koopmans’ Theorem Based on Orbital-Optimized Methods”.  J. Chem. Theory Comput., 10, 2041-2048. DOI: 10.1021/ct500186j

  32. Soydaş, E., Bozkaya, U. 2014. “Assessment of the Orbital-Optimized Coupled-Electron Pair Theory for Thermochemistry and Kinetics: Improving upon CCSD and CEPA(1)”. J. Comput. Chem., 35 , 1073-1081. DOI: 10.1002/jcc.23592

  33. Bozkaya, U., Sherrill, C. D. 2014. “Orbital-optimized MP2.5 and Its Analytic Gradients: Approaching CCSD(T) Quality for Noncovalent Interactions”. J. Chem. Phys., 141, 204105. DOI: 10.1063/1.4902226.

  34. Soydaş, E.; Bozkaya, U. 2013. Accurate Open-Shell Noncovalent Interaction Energies from the Orbital-Optimized Møller–Plesset Perturbation Theory: Achieving CCSD Quality at the MP2 Level by Orbital Optimization. J. Chem. Theory Comput., 9, 4679-4683.  DOI: 10.1021/ct4008124

  35. Bozkaya, U. 2013. “The Extended Koopmans’ Theorem for Orbital-Optimized Methods: Accurate Computation of Ionization Potentials”. J. Chem. Phys., 139, 154105DOI: 10.1063/1.4825041

  36. Bozkaya, U. 2013. “Analytic Energy Gradients for the Orbital-Optimized Third-Order Møller–Plesset Perturbation Theory”. J. Chem. Phys., 139, 104116.  DOI: 10.1063/1.4820877

  37. Bozkaya, U., Sherrill, C. D. 2013. “Orbital-Optimized Coupled-Electron Pair Theory and its Analytic Gradients: Accurate Equilibrium Geometries, Harmonic Vibrational Frequencies, and Hydrogen Transfer Reactions”. J. Chem. Phys., 139, 054104. DOI: 10.1063/1.4816628.

  38. Bozkaya, U., Sherrill, C. D. 2013. “Analytic Energy Gradients for the Orbital-Optimized Second-Order Møller–Plesset Perturbation Theory”. J. Chem. Phys., 138, 184103. DOI: 10.1063/1.4803662.

  39. Soydaş, E., Bozkaya, U. 2013. Assessment of Orbital-Optimized Third-Order Møller-Plesset Perturbation Theory and Its Spin-Component and Spin-Opposite Scaled Variants for Thermochemistry and Kinetics. J. Chem. Theory Comput., 9, 1452-1460. DOI: 10.1021/ct301078q

  40. Baglan, M., Ozturk, S., Gür, B., Meral, K., Bozkaya, U., Bozdemir, O. A., Atılgan, S. 2013. "Novel Phenomena for Aggregation Induced Emission Enhancement: Highly Fluorescent Hydrophobic TPE-BODIPY Couples in both Organic and Aqueous Media. RSC Advances, 3, 15866-15874DOI: 10.1039/C3RA40791H

  41. Bozkaya, U., Schaefer, H. F. 2012 “Symmetric and Asymmetric Triple-Excitation Corrections for Orbital-Optimized Coupled-Cluster Doubles Method: Improving Upon CCSD(T) and CCSD(T)Λ. Application to Potential Energy Surfaces”. J. Chem. Phys., 136, 204114.  DOI: 10.1063/1.4720382 

  42. Bozkaya, U., Turney, J. M., Yamaguchi, Y., Schaefer, H. F. 2012. “The Lowest-Lying Electronic Singlet and Triplet Potential Energy Surfaces for the HNO-NOH System: Energetics, Unimolecular Rate Constants, Tunneling and Kinetic Isotope Effects for the Isomerization and Dissociation Reactions”J. Chem. Phys., 136, 164303. DOI:10.1063/1.4704895.

  43. Önder, M., Alp, N., Akbayrak, S., Biçer, A., Gültekin, M. S., Özkar, S., Bozkaya, U. 2012. “Dihydroxylation of Olefins Catalyzed by Zeolite-Confined Osmium Nanoclusters: A Novel, Efficient, Reusable and Eco-Friendly Method for the Preparation of 1,2-cis-Diols”. Green Chem., 14, 1488-1492. DOI: 10.1039/C2GC16616J

  44. Bozkaya, U., Özkan, İ. 2012. “Thermal Denitrogenation of 7-isopropylidene-2,3-diaza-norbornene: Formation of Substituted 3-methylene-(1,4)-pentadienes”. Phys. Chem. Chem Phys., 14, 14282-14292. DOI: 10.1039/C2CP42349A

  45. Bozkaya, U., Özkan, İ. 2012. “Thermal Aromatizations of 2-Vinylmethylenecyclopropane and 3-Vinylcyclobutene”. J. Org. Chem., 77, 5714-5723. DOI: 10.1021/jo300877w

  46. Bozkaya, U., Özkan, İ. 2012. “Thermal Rearrangements of 1-Ethynyl-2-methylcyclopropane: A Computational Study”. J. Phys. Chem. A, 116, 3274-3281. DOI: 10.1021/jp3000575

  47. Bozkaya, U., Özkan, İ. 2012. “Potential Energy Surfaces for Rearrangements of Berson Trimethylenemethanes”. J. Phys. Chem. A, 116, 2309-2321. DOI: 10.1021/jp211518f

  48. Bozkaya, U., Özkan, İ. 2012. “Theoretical Study of Thermal Rearrangements of 1-Hexen-5-yne, 1,2,5-Hexatriene, and 2-Methylenebicyclo[2.1.0]pentane”. J. Org. Chem., 77, 2337-2344. DOI: 10.1021/jo202645k

  49. Bozkaya, U. 2011. “Orbital-Optimized Third-Order Møller-Plesset Perturbation Theory and Its Spin-Component and Spin-Opposite Scaled Variants: Application to Symmetry Breaking Problems”. J. Chem. Phys., 135, 224103. DOI: 10.1063/1.3665134

  50. Bozkaya, U., Turney, J. M., Yamaguchi, Y., Schaefer, H. F., Sherrill, C. D. 2011. “Quadratically Convergent Algorithm for Orbital Optimization in the Orbital-Optimized Coupled-Cluster Doubles Method and in Orbital-Optimized Second-Order Møller-Plesset Perturbation Theory”. J. Chem. Phys., 135, 104103. DOI: 10.1063/1.3631129.

  51. Bozkaya, U., Schaefer, H. F. 2010. “The Ten Chemically Transparent Dinitro-Naphtalene Isomers and their Radical Anions”. Mol. Phys., 108, 2491. DOI: 10.1080/00268976.2010.507225

  52. Bozkaya, U., Turney, J. M., Yamaguchi, Y., Schaefer, H. F. 2010. “The Barrier Height, Unimolecular Rate Constant, and Lifetime for the Dissociation of HN2”. J. Chem. Phys., 132, 064308. DOI:10.1063/1.3310285             

  53. Çaykara, T., Bozkaya, U., Kantoğlu, Ö. 2003. “Network Structure and Swelling Behavior of Poly(acrylamide/crotonic acid) Hydrogels in Aqueous Salt Solutions”. J. Polym. Sci. Part B: Polym. Phys., 41, 1656. DOI: 10.1002/polb.10500


Hacettepe University Chemistry Department
06800 Beytepe Ankara, TURKEY